张强锋
学科方向：
主要从事结构生物学、基因组学、人工智能和大数据交叉领域研究。
研究方向:
实验室聚焦RNA结构新技术开发和应用研究，开发了细胞内RNA结构高通量解析新技术，并应用于解析新冠病毒等RNA病毒基因组结构图谱，发现并验证了病毒RNA保守结构对其传播的作用。实验室还致力于开发结构生物学人工智能新算法。以通讯作者身份发表Cell等杂志学术文章多篇。
实验室主页：
http://zhanglab.net
代表性科研论文:
1. Lei Xiong*, Kang Tian*, Yuzhe Li, Weixi Ning, Xin Gao, Qiangfeng Cliff Zhang#. (2022) Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space. Nature Communications. 13(1):6118.
2. Meiling Piao*, Pan Li, Xiaomin Zeng*, Xi-Wen Wang*, Lan Kang, Jinsong Zhang, Yifan Wei, Shaojun Zhang, Lei Tang, Jianghui Zhu, Chun Kit Kwok, Xiaoyu Hu#, Qiangfeng Cliff Zhang#. (2022) An ultra low-input method for global RNA structure probing uncovers Regnase-1-mediated regulation in macrophages. Fundamental Research, 2(1):2-13.
3. Shaojun Zhang*, Wenze Huang*, Lili Ren*, Xiaohui Ju*, Mingli Gong*, Jian Rao*, Lei Sun, Pan Li, Qiang Ding#, Jianwei Wang#, Qiangfeng Cliff Zhang#. (2021) Comparison of viral RNA-host protein interactomes across pathogenic RNA viruses informs rapid antiviral drug discovery for SARS-CoV-2. Cell Research, 32 (1):9-23.
4. Jing Gong*, Kui Xu*, Ziyuan Ma, Zhi John Lu, Qiangfeng Cliff Zhang#. (2021) A deep learning method for recovering missing signals in transcriptome-wide RNA structure profiles from probing experiments. Nature Machine Intelligence, 3(11):995-1006.
5. Qing-Jun Luo*, Jinsong Zhang*, Pan Li*, Qing Wang, Yue Zhang, Biswajoy Roy-Chaudhuri, Jianpeng Xu, Mark A. Kay#, Qiangfeng Cliff Zhang#. (2021) RNA structure probing reveals the structural basis of Dicer binding and cleavage. Nature Communications, 12 (1):1-12
6. Lei Sun*, Pan Li*, Xiaohui Ju*, Jian Rao*, Wenze Huang*, Lili Ren, Shaojun Zhang, Tuanlin Xiong, Kui Xu, Xiaolin Zhou, Mingli Gong, Eric Miska, Qiang Ding#, Jianwei Wang#, Qiangfeng Cliff Zhang#. (2021) In vivo structural characterization of the SARS-CoV-2 RNA genome identifies host proteins vulnerable to repurposed drugs. Cell. 184(7):1865-1883.e20.
7. Lei Sun*, Kui Xu*, Wenze Huang*, Yucheng T.Yang*, Pan Li, Lei Tang, Tuanlin Xiong, Qiangfeng Cliff Zhang#. (2021) Predicting dynamic cellular protein-RNA interactions by deep learning using in vivo RNA structures. Cell Research. 31(5):495-516.
8. Boyang Shi*, Jinsong Zhang*, Jian Heng*, Jing Gong*, Ting Zhang, Pan Li, Bao-Fa Sun, Ying Yang, Ning Zhang, Yong-Liang Zhao, Hai-Lin Wang, Feng Liu#, Qiangfeng Cliff Zhang#, Yun-Gui Yang#. (2020) RNA structural dynamics regulates early embryogenesis through controlling transcriptome fate and function. Genome Biology, 21(1):1-27.
9. Xiaocheng Weng*, Jing Gong*, Yi Chen*, Tong Wu*, Fang Wang, Shixi Yang, Yushu Yuan, Guanzheng Luo, Kai Chen, Lulu Hu, Honghui Ma, Pingluan Wang, Qiangfeng Cliff Zhang#, Xiang Zhou#, Chuan He#. (2020) Keth-seq for transcriptome-wide RNA structure mapping. Nature Chemical Biology, 16(5):489-492.
10. Lei Xiong, Kui Xu, Kang Tian, Yanqiu Shao, Lei Tang, Ge Gao, Michael Zhang, Tao Jiang, Qiangfeng Cliff Zhang#. (2019) SCALE method for single-cell ATAC-seq analysis via latent feature extraction. Nature Communications, 10(1):4576
11. Lei Sun*, Furqan M Fazal*, Pan Li*, James P Broughton, Byron Lee, Lei Tang, Wenze Huang, Eric T Kool, Howard Y Chang#, Qiangfeng Cliff Zhang#. (2019) RNA structure maps across mammalian cellular compartments. Nature structural & molecular biology. 26(4):322-330.
12. Kui Xu, Zhe Wang, Jianping Shi, Hongsheng Li, Qiangfeng Cliff Zhang#. (2019) A2-Net: Molecular Structure Estimation from Cryo-EM Density Volumes. In the Proceedings of the Thirty-Fourth AAAI Conference on Artificial Intelligence (AAAI 2019):1230-1237. Jan. 27 – Feb.1, Hawaii, USA
13. Pan Li*, Yifan Wei*, Miao Mei*, Lei Tang*, Lei Sun, Wenze Huang, Jianyu Zhou, Chunlin Zou, Shaojun Zhang, Cheng-feng Qin, Tao Jiang, Jianfeng Dai, Xu Tan#, Qiangfeng Cliff Zhang#. (2018) Integrative Analysis of Zika Virus Genome RNA Structure Reveals Critical Determinants of Viral Infectivity. Cell Host & Microbe. 24(6):875-886